SIMAP Project

Post by **Astro** » Sun Aug 24, 2008 5:29 pm

The deadlines for work just received is 8/31/08 1:20 PM

Post by **Labbie** » Sun Aug 24, 2008 5:32 pm

So a week then. If I fill up tonight with 3 days worth I should be able to beat the deadline after I get back.

Post by **Astro** » Sun Aug 24, 2008 5:37 pm

I don't know that there is any "rush" to get wus. Unlike most runs, they have LOTS of work that'll likely last a couple weeks anyway. No need to "pre hoard" them, at least not for a while yet.

Post by **Labbie** » Sun Aug 24, 2008 5:43 pm

But I waaaaaannnnntttt to hoard them.

I must have them!!!

Post by **Gavin Shaw** » Sun Aug 24, 2008 11:36 pm

Well I just grabbed 30 units for my laptop. Still have 37 Seti units since I was trying to run the POTM this time.

I might suspend the Seti to get SIMAP through, but I need to get rid of the Seti units in time for September POTM, which will most likely be ABC...

Post by **Gavin Shaw** » Fri Aug 29, 2008 11:48 am

SIMAP is still spitting out work. I am guessing, based on the batch monitor they are probably about half through the work available.

There is a limit of 30 units per CPU core per machine (ie. my C2D laptop can only have a max of 60 units in progress at any time).

Post by **Astro** » Sun Sep 07, 2008 8:01 am

It's my guess that Simap will be out of work in the next 24 to 48 hours.

Post by **Gavin Shaw** » Sun Sep 14, 2008 11:25 pm

15 Sep 2008 AEST:

The project has currently no work (see below).
The similarity matrix of the SIMAP project is currently up to date. All workunits from the last calculation period are distributed, thanks to all users for chrunchig them.
The calculation of new simap workunits containing the novel proteins from september 2008 (simap app) and their domains (hmmer app) will start around october 1st.

The previous batch of work is now finished. Look out for the next batch next month...

Post by **Gavin Shaw** » Thu Oct 30, 2008 10:01 pm

31 Oct 2008 AEST or 30 Oct 2008 Napa, CA Local Time (whatever the code is for that)...

October 28, 2008
New Workunits: the calculation of similarities and features of approx. 100.000 new sequences, that were imported from protein databases into SIMAP in october, will start in the evening (UTC) of october 30th.

Post by **Gavin Shaw** » Sun Nov 23, 2008 11:52 pm

Just a reminder for those that are interested in SIMAP.

The calculation of new simap workunits containing the novel proteins from november 2008 (simap app) and their domains (hmmer app) will start around december 1st.

Post by **Gavin Shaw** » Mon Dec 01, 2008 12:28 am

01 Dec 2008 AEST:

November 30, 2008
New Workunits: the calculation of similarities and features of approx. 200.000 new sequences, that were imported from protein databases into SIMAP in november, will start in the morning (UTC) of december 1st.

Anyone wanting some units better get ready...

Post by **Gavin Shaw** » Tue Dec 02, 2008 1:34 am

02 Dec 2008 AEST:

Okay people. For those interested.

SIMAP has released work. I have one machine set with a 50/50 split at SIMAP and MW for on.

So go and get them...

Post by **danielmid** » Tue Dec 02, 2008 5:50 am

Been working all day on them!

Post by **Gavin Shaw** » Sun Dec 14, 2008 11:23 pm

15 Dec 2008 AEST:

December 14, 2008
New Workunits: an additional batch of workunits has been started for the calculation of similarities and features of approx. 1.500.000 new sequences, that were imported from metagenomes.

Looks like they have work again?

Post by **danielmid** » Mon Dec 15, 2008 2:48 am

Yup, just confirmed it.

Post by **sdl735** » Mon Dec 15, 2008 3:14 am

Gavin Shaw wrote:15 Dec 2008 AEST:

December 14, 2008
New Workunits: an additional batch of workunits has been started for the calculation of similarities and features of approx. 1.500.000 new sequences, that were imported from metagenomes.

Looks like they have work again?

I got some

Post by **Gavin Shaw** » Sun Dec 21, 2008 11:34 pm

22 Dec 2008 AEST:

SIMAP has run out of work for this batch...

Post by **Gavin Shaw** » Sun Jan 04, 2009 2:01 am

04 Jan 2009 AEST:

Current SIMAP batch is just over 53% done...

Post by **Bird-Dog** » Sat Jan 31, 2009 5:54 pm

Project status
Calculation of SIMAP updates is starting soon.
The calculation of new simap workunits containing new sequences from public databases imported in January 2009 (simap app) and their domains (hmmer app) will start in the evening (UTC) of February 1st.

Post by **Gavin Shaw** » Sun Feb 01, 2009 12:50 pm

Alrightly, SIMAP will be spitting out work soon for anyone who can drag themselves away from the high payout over at MW :)

I'll have one machine on a 50/50 split between SIMAP and MW. I'm working on getting SIMAP up to 30,000 and inline with Spinhenge. Of course this means I will take a hit with my work at MW and not get paid so much.

Post by **debs3759** » Sun Feb 01, 2009 1:00 pm

What, you mean there are still people who are in it for the science?

Post by **Gavin Shaw** » Sun Feb 01, 2009 1:29 pm

Sometimes I do it for the science.

That's why I have credit at Rosetta and will get it up to 100,000 at some point. But that will be a painful process due to low pay.

I do enjoy the pay. But I will give something towards other not so high projects. But I just don't like spreading myself too far.

I think that makes sense?

Post by **debs3759** » Sun Feb 01, 2009 2:34 pm

I use my C2D to try out projects and see what they pay.

MW will go anywhere, as all my 64-bit machines get the same credits for it. I'm thinking of keeping the slower machines running only MW (for the creds, of course), and then running projects for the science on the C2D. That'll change when I get more fast machines running (the FX74 being the one I hope to get most work out of when all the bits are here).

Post by **Gavin Shaw** » Sun Mar 01, 2009 11:27 pm

02 Mar 2009 AEST:

Simap has released work for this month. Get in now, if you can tear yourself away from MilkyWay...

Post by **Gavin Shaw** » Fri Mar 06, 2009 1:50 am

06 Mar 2009 AEST:

Simap is out of work. Next lot of work is expected around the 1st of April.

Post by **Gavin Shaw** » Tue Mar 31, 2009 3:06 pm

01 Apr 2009 AEST:

SIMAP has released work for April.

Come and get some while they are available...

Post by **Gavin Shaw** » Fri Apr 03, 2009 2:03 am

03 Apr 2009 AEST:

SIMAP is now out of work. Next lot expected around the 1st of May...

Post by **Bird-Dog** » Sat May 30, 2009 6:29 am

May 30, 2009
New Workunits: the calculation of similarities and features of approx. 650.000 new sequences, that were imported from protein databases into SIMAP in May, will start in the evening (UTC) of June 1st.

A bigger batch than normal and Calm Chaos is only 35k off 1m credits.

Post by **Gavin Shaw** » Wed Jul 01, 2009 4:59 am

The July release of SIMAP units is almost here. We currently sit just outside the top 60 teams.

I will be releasing my 3 C2 machines onto the project once they release the work. Anyone going to come and join me?

Post by **MAGPIE** » Wed Jul 01, 2009 10:08 am

yep..I guess I can give you a hand..its a pleasure

Post by **sdl735** » Wed Jul 01, 2009 12:34 pm

Watch out .... Here I come....

Post by **Gavin Shaw** » Wed Jul 01, 2009 11:37 pm

SIMAP work has been available for a little while now. I am having some trouble picking up work on two of my systems. The third however has quite a few units lined up.

The team is at currently ranked at 61 for total credit.

And our team members are:

Let the race and the scramble begin.

Post by **Labbie** » Thu Jul 02, 2009 12:01 am

I just added the i7 to it.

Don't know why I never have attached before.

Post by **Gavin Shaw** » Sat Jul 04, 2009 9:57 am

SIMAP has now run out of work for use. So finish off what you have...

Post by **Labbie** » Sat Jul 04, 2009 5:56 pm

I've still got 100-150 across three machines.